{
  "_id": "6a5b10749baadeef8ab4ad1c",
  "Package": "ProteoBayes",
  "Title": "Bayesian Statistical Tools for Quantitative Proteomics",
  "Version": "1.0.0",
  "Authors@R": "c(person(\"Arthur\", \"Leroy\", , \"arthur.leroy.pro@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-0806-8934\")),\nperson(\"Marie\", \"Chion\", , \"marie.chion@protonmail.com\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-8956-8388\")))",
  "Description": "Bayesian toolbox for quantitative proteomics. In\nparticular, this package provides functions to generate\nsynthetic datasets, execute Bayesian differential analysis\nmethods and display results, as described in the associated\narticle Marie Chion and Arthur Leroy (2025) <arXiv:2307.08975>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/testthat/edition": "3",
  "URL": "https://mariechion.github.io/ProteoBayes/",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://mariechion.r-universe.dev",
  "Date/Publication": "2026-04-19 15:34:08 UTC",
  "RemoteUrl": "https://github.com/mariechion/proteobayes",
  "RemoteRef": "HEAD",
  "RemoteSha": "d7a72f71de3d6ea021a374d92dfd355261f14343",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-18 05:31:49 UTC",
    "User": "root"
  },
  "Author": "Arthur Leroy [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-0806-8934>),\nMarie Chion [aut] (ORCID: <https://orcid.org/0000-0001-8956-8388>)",
  "Maintainer": "Arthur Leroy <arthur.leroy.pro@gmail.com>",
  "_user": "mariechion",
  "_type": "src",
  "_file": "ProteoBayes_1.0.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/fa09f78e6065e34708eb2bc3d3c7bbd2b9e16cf3030099a478b797deb52804f0",
  "_filesize": 218065,
  "_sha256": "fa09f78e6065e34708eb2bc3d3c7bbd2b9e16cf3030099a478b797deb52804f0",
  "_expires": "2026-10-26T05:34:42.000Z",
  "_created": "2026-07-18T05:31:49.000Z",
  "_published": "2026-07-18T05:34:44.360Z",
  "_jobs": [
    {
      "job": 88048608101,
      "time": 130,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8425946503"
    },
    {
      "job": 88048608081,
      "time": 121,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8425945012"
    },
    {
      "job": 88048608113,
      "time": 70,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8425936897"
    },
    {
      "job": 88048608088,
      "time": 83,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8425939363"
    },
    {
      "job": 88048352134,
      "time": 186,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8425925361"
    },
    {
      "job": 88048608083,
      "time": 108,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8425943156"
    },
    {
      "job": 88048608098,
      "time": 60,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8425935289"
    },
    {
      "job": 88048608111,
      "time": 63,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8425935975"
    },
    {
      "job": 88048608105,
      "time": 81,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8425939479"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/mariechion/actions/runs/29632317217",
  "_status": "success",
  "_upstream": "https://github.com/mariechion/proteobayes",
  "_commit": {
    "id": "d7a72f71de3d6ea021a374d92dfd355261f14343",
    "author": "Arthur <arthur.leroy.pro@gmail.com>",
    "committer": "Arthur <arthur.leroy.pro@gmail.com>",
    "message": "Update compute_differences.R\n",
    "time": 1776612848
  },
  "_maintainer": {
    "name": "Arthur Leroy",
    "email": "arthur.leroy.pro@gmail.com",
    "login": "arthurleroy",
    "description": "",
    "uuid": 36625932,
    "orcid": "0000-0003-0806-8934"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "extraDistr",
      "role": "Imports"
    },
    {
      "package": "gridExtra",
      "role": "Imports"
    },
    {
      "package": "LaplacesDemon",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "mariechion",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-33",
      "n": 1
    },
    {
      "week": "2025-36",
      "n": 3
    },
    {
      "week": "2025-43",
      "n": 3
    },
    {
      "week": "2025-47",
      "n": 1
    },
    {
      "week": "2026-01",
      "n": 1
    },
    {
      "week": "2026-16",
      "n": 5
    }
  ],
  "_tags": [],
  "_stars": 3,
  "_contributors": [
    {
      "user": "arthurleroy",
      "count": 43,
      "uuid": 36625932
    },
    {
      "user": "mariechion",
      "count": 3,
      "uuid": 43200714
    }
  ],
  "_userbio": {
    "uuid": 43200714,
    "type": "user",
    "name": "Marie Chion",
    "followers": 7
  },
  "_downloads": {
    "count": 223,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ProteoBayes"
  },
  "_devurl": "https://github.com/mariechion/proteobayes",
  "_pkgdown": "https://mariechion.github.io/ProteoBayes/",
  "_searchresults": 11,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/ProteoBayes.html",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/mariechion/proteobayes",
  "_realowner": "mariechion",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2023-07-19"
    }
  ],
  "_exports": [
    "%>%",
    "identify_diff",
    "multi_CI",
    "multi_identify_diff",
    "multi_overlap_coef",
    "multi_posterior_mean",
    "overlap_coef",
    "plot_distrib",
    "plot_multi_diff",
    "posterior_mean",
    "sample_distrib",
    "simu_db"
  ],
  "_help": [
    {
      "page": "identify_diff",
      "title": "Identify posterior mean differences",
      "topics": [
        "identify_diff"
      ]
    },
    {
      "page": "multi_CI",
      "title": "Multidimensional Credible Interval",
      "topics": [
        "multi_CI"
      ]
    },
    {
      "page": "multi_identify_diff",
      "title": "Identify differences in multivariate posteriors",
      "topics": [
        "multi_identify_diff"
      ]
    },
    {
      "page": "multi_overlap_coef",
      "title": "Overlapping coefficient between multivariate t-distributions",
      "topics": [
        "multi_overlap_coef"
      ]
    },
    {
      "page": "multi_posterior_mean",
      "title": "Multivariate posterior distribution of the means",
      "topics": [
        "multi_posterior_mean"
      ]
    },
    {
      "page": "overlap_coef",
      "title": "Overlapping coefficient between univariate t-distributions",
      "topics": [
        "overlap_coef"
      ]
    },
    {
      "page": "plot_distrib",
      "title": "Plot the posterior distribution of the difference of means",
      "topics": [
        "plot_distrib"
      ]
    },
    {
      "page": "plot_multi_diff",
      "title": "Plot multivariate comparison between groups",
      "topics": [
        "plot_multi_diff"
      ]
    },
    {
      "page": "posterior_mean",
      "title": "Posterior distribution of the means",
      "topics": [
        "posterior_mean"
      ]
    },
    {
      "page": "sample_distrib",
      "title": "Sample from a t-distribution",
      "topics": [
        "sample_distrib"
      ]
    },
    {
      "page": "simu_db",
      "title": "Generate a synthetic dataset tailored for ProteoBayes",
      "topics": [
        "simu_db"
      ]
    },
    {
      "page": "vectorised_multi",
      "title": "Vectorised version of multi_posterior_mean()",
      "topics": [
        "vectorised_multi"
      ]
    }
  ],
  "_pkglogo": "https://github.com/mariechion/proteobayes/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/mariechion/proteobayes/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "cpp11",
    "dplyr",
    "extraDistr",
    "farver",
    "generics",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "isoband",
    "labeling",
    "LaplacesDemon",
    "lifecycle",
    "magrittr",
    "mvtnorm",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_score": 3.9956351945975497,
  "_indexed": true,
  "_nocasepkg": "proteobayes",
  "_universes": [
    "mariechion",
    "arthurleroy"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-07-18T05:34:04.000Z",
      "distro": "resolute",
      "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343",
      "fileid": "https://r2.ropensci.org/cf897608fc3141dad7df40183271c6f27c5ed09f0ee0d7359e3e0b529dcd484b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/mariechion/actions/runs/29632317217"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-07-18T05:33:56.000Z",
      "distro": "resolute",
      "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343",
      "fileid": "https://r2.ropensci.org/8d80f2f541b4cfaa06a63d0e519e3ef7b538f5681e390cbf670e1aa6d5c0e3bb",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/mariechion/actions/runs/29632317217"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-07-18T05:33:07.000Z",
      "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343",
      "fileid": "https://r2.ropensci.org/0bb5f1c77734d2f65fcde0ebe398888fc8abd3138510f86bbcfdf1f19f1e2802",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/mariechion/actions/runs/29632317217"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-07-18T05:33:21.000Z",
      "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343",
      "fileid": "https://r2.ropensci.org/aa4313e5b1bafe218e4b3aea2036214952b840b0ed3a67d9d67a50f4d9b9ccd9",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/mariechion/actions/runs/29632317217"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-07-18T05:33:54.000Z",
      "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343",
      "fileid": "https://r2.ropensci.org/5525a953a06961915b7b50a63b5db58d88cac0f5f676294613d2fee65713b4d6",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mariechion/actions/runs/29632317217"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-07-18T05:32:50.000Z",
      "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343",
      "fileid": "https://r2.ropensci.org/f39dadaf70b295bdb2acc5cd0fd7558c5e789b896b04c41385bb9f64fdffbabd",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/mariechion/actions/runs/29632317217"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-07-18T05:32:52.000Z",
      "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343",
      "fileid": "https://r2.ropensci.org/75acf9eaac856ae7e5b138ca2be8d5a99318fe8500130458a53a9552930960a0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/mariechion/actions/runs/29632317217"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-07-18T05:33:15.000Z",
      "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343",
      "fileid": "https://r2.ropensci.org/6e214e248cbbd6c680178db2340f3423a0e87a0c011ef6dba695ee3d19e890f4",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/mariechion/actions/runs/29632317217"
    }
  ]
}