{ "_id": "6a339de83efcd9bda43a6dbd", "Package": "ProteoBayes", "Title": "Bayesian Statistical Tools for Quantitative Proteomics", "Version": "1.0.0", "Authors@R": "c(person(\"Arthur\", \"Leroy\", , \"arthur.leroy.pro@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-0806-8934\")),\nperson(\"Marie\", \"Chion\", , \"marie.chion@protonmail.com\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-8956-8388\")))", "Description": "Bayesian toolbox for quantitative proteomics. In\nparticular, this package provides functions to generate\nsynthetic datasets, execute Bayesian differential analysis\nmethods and display results, as described in the associated\narticle Marie Chion and Arthur Leroy (2025) .", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "URL": "https://mariechion.github.io/ProteoBayes/", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://mariechion.r-universe.dev", "Date/Publication": "2026-04-19 15:34:08 UTC", "RemoteUrl": "https://github.com/mariechion/proteobayes", "RemoteRef": "HEAD", "RemoteSha": "d7a72f71de3d6ea021a374d92dfd355261f14343", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-18 07:23:05 UTC", "User": "root" }, "Author": "Arthur Leroy [aut, cre] (ORCID:\n),\nMarie Chion [aut] (ORCID: )", "Maintainer": "Arthur Leroy ", "MD5sum": "ee62cc4c668a53f48eb656eb8a4d8c8e", "_user": "mariechion", "_type": "src", "_file": "ProteoBayes_1.0.0.tar.gz", "_fileid": "9487e485e47c4a54fc5bf63790c400c7c57e81a0caf2f2826ef9e1593c1d969b", "_filesize": 220240, "_sha256": "9487e485e47c4a54fc5bf63790c400c7c57e81a0caf2f2826ef9e1593c1d969b", "_created": "2026-06-18T07:23:05.000Z", "_published": "2026-06-18T07:27:36.724Z", "_distro": "noble", "_jobs": [ { "job": 82076289598, "time": 116, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7716750804" }, { "job": 82076289607, "time": 129, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7716752333" }, { "job": 82076289615, "time": 76, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7716778627" }, { "job": 82076289623, "time": 83, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7716785094" }, { "job": 82075841524, "time": 176, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7716712507" }, { "job": 82076289605, "time": 100, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7716744017" }, { "job": 82076289637, "time": 75, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7716736535" }, { "job": 82076289613, "time": 69, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7716734646" }, { "job": 82076289626, "time": 69, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7716734774" } ], "_buildurl": "https://github.com/r-universe/mariechion/actions/runs/27743404596", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/mariechion/proteobayes", "_commit": { "id": "d7a72f71de3d6ea021a374d92dfd355261f14343", "author": "Arthur ", "committer": "Arthur ", "message": "Update compute_differences.R\n", "time": 1776612848 }, "_maintainer": { "name": "Arthur Leroy", "email": "arthur.leroy.pro@gmail.com", "login": "arthurleroy", "description": "", "uuid": 36625932, "orcid": "0000-0003-0806-8934" }, "_registered": true, "_dependencies": [ { "package": "dplyr", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "mvtnorm", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "extraDistr", "role": "Imports" }, { "package": "gridExtra", "role": "Imports" }, { "package": "LaplacesDemon", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "mariechion", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-33", "n": 1 }, { "week": "2025-36", "n": 3 }, { "week": "2025-43", "n": 3 }, { "week": "2025-47", "n": 1 }, { "week": "2026-01", "n": 1 }, { "week": "2026-16", "n": 5 } ], "_tags": [], "_stars": 3, "_contributors": [ { "user": "arthurleroy", "count": 43, "uuid": 36625932 }, { "user": "mariechion", "count": 3, "uuid": 43200714 } ], "_userbio": { "uuid": 43200714, "type": "user", "name": "Marie Chion", "followers": 7 }, "_downloads": { "count": 171, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ProteoBayes" }, "_devurl": "https://github.com/mariechion/proteobayes", "_pkgdown": "https://mariechion.github.io/ProteoBayes/", "_searchresults": 11, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/ProteoBayes.html", "extra/readme.html", "extra/readme.md", "LICENSE", "manual.pdf" ], "_homeurl": "https://github.com/mariechion/proteobayes", "_realowner": "mariechion", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2023-07-19" } ], "_exports": [ "%>%", "identify_diff", "multi_CI", "multi_identify_diff", "multi_overlap_coef", "multi_posterior_mean", "overlap_coef", "plot_distrib", "plot_multi_diff", "posterior_mean", "sample_distrib", "simu_db" ], "_help": [ { "page": "identify_diff", "title": "Identify posterior mean differences", "topics": [ "identify_diff" ] }, { "page": "multi_CI", "title": "Multidimensional Credible Interval", "topics": [ "multi_CI" ] }, { "page": "multi_identify_diff", "title": "Identify differences in multivariate posteriors", "topics": [ "multi_identify_diff" ] }, { "page": "multi_overlap_coef", "title": "Overlapping coefficient between multivariate t-distributions", "topics": [ "multi_overlap_coef" ] }, { "page": "multi_posterior_mean", "title": "Multivariate posterior distribution of the means", "topics": [ "multi_posterior_mean" ] }, { "page": "overlap_coef", "title": "Overlapping coefficient between univariate t-distributions", "topics": [ "overlap_coef" ] }, { "page": "plot_distrib", "title": "Plot the posterior distribution of the difference of means", "topics": [ "plot_distrib" ] }, { "page": "plot_multi_diff", "title": "Plot multivariate comparison between groups", "topics": [ "plot_multi_diff" ] }, { "page": "posterior_mean", "title": "Posterior distribution of the means", "topics": [ "posterior_mean" ] }, { "page": "sample_distrib", "title": "Sample from a t-distribution", "topics": [ "sample_distrib" ] }, { "page": "simu_db", "title": "Generate a synthetic dataset tailored for ProteoBayes", "topics": [ "simu_db" ] }, { "page": "vectorised_multi", "title": "Vectorised version of multi_posterior_mean()", "topics": [ "vectorised_multi" ] } ], "_pkglogo": "https://github.com/mariechion/proteobayes/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/mariechion/proteobayes/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "dplyr", "extraDistr", "farver", "generics", "ggplot2", "glue", "gridExtra", "gtable", "isoband", "labeling", "LaplacesDemon", "lifecycle", "magrittr", "mvtnorm", "pillar", "pkgconfig", "purrr", "R6", "RColorBrewer", "Rcpp", "RcppArmadillo", "rlang", "S7", "scales", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "viridisLite", "withr" ], "_score": 3.9956351945975497, "_indexed": true, "_nocasepkg": "proteobayes", "_universes": [ "mariechion", "arthurleroy" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.0", "date": "2026-06-18T07:25:12.000Z", "distro": "noble", "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343", "fileid": "65a71ddbdc61892f394996c32f84c3070303786487ed8c390b6fbba29a67ee67", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mariechion/actions/runs/27743404596" }, { "r": "4.6.0", "os": "linux", "version": "1.0.0", "date": "2026-06-18T07:25:15.000Z", "distro": "noble", "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343", "fileid": "6623a7f227e78a1a44a837e7844291d8bb200e315bf1750d74a5f67c389cf589", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mariechion/actions/runs/27743404596" }, { "r": "4.5.3", "os": "mac", "version": "1.0.0", "date": "2026-06-18T07:26:46.000Z", "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343", "fileid": "75cd995a3b99b77c01b06e27be8359454d37c8cfa0291b362701582d1a641ca6", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mariechion/actions/runs/27743404596" }, { "r": "4.6.0", "os": "mac", "version": "1.0.0", "date": "2026-06-18T07:27:06.000Z", "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343", "fileid": "b3f90cdb0e9091b93193d850906c1bb68e9fe1cd0585d97bafa2a31550e79abb", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mariechion/actions/runs/27743404596" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.0", "date": "2026-06-18T07:25:01.000Z", "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343", "fileid": "3feb057e2e73b8bf1ee4350357ac2b741fcba60e0ddaf5183cef5bacea5908c4", "status": "success", "buildurl": "https://github.com/r-universe/mariechion/actions/runs/27743404596" }, { "r": "4.7.0", "os": "win", "version": "1.0.0", "date": "2026-06-18T07:24:19.000Z", "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343", "fileid": "d5957afb4d594559dff55634e85e37b3b693a923173fa3b084cd05f42c9e4c62", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mariechion/actions/runs/27743404596" }, { "r": "4.5.3", "os": "win", "version": "1.0.0", "date": "2026-06-18T07:24:12.000Z", "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343", "fileid": "cb617893e1b4826a0f348ad42be61f31e62f717852d9ea5ea2f41e854f32c94c", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mariechion/actions/runs/27743404596" }, { "r": "4.6.0", "os": "win", "version": "1.0.0", "date": "2026-06-18T07:24:13.000Z", "commit": "d7a72f71de3d6ea021a374d92dfd355261f14343", "fileid": "2ba7161f06ea770f8465c599d0d09937d0cb5913a8c21393fd70e0a7b7191f64", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mariechion/actions/runs/27743404596" } ] }